Fresh Milled Flour Blueberry Muffins-No Sugar
Last Updated on March 31, 2026 by Kayla Ruetten
The childhood aroma of blueberry muffins baking makes my mouth water just thinking about them. If you want the best taste of fresh fresh milled flour plus a super easy beginner muffin, this recipe is for you. These fresh milled flour blueberry muffins have just a handful of ingredients and come together quickly for breakfast or dessert. Before we were able to eat “gluten” again (see more below), we spent much time and intention on a gut healthy way of eating to restore our digestive systems. We ate a lot of these grain & sugar-free blueberry muffins back then, and still cycle them into our meal rotations. The combination of healing and sealing our gut lining plus switching over to fresh milled flour has allowed us to eat blueberry muffins baked with whole wheat flour again. Perhaps your family can, too! Read on for more info on this.

New to fresh milled flour? These muffins are a simple and easy recipe to start with. With simple ingredients, you need no rise time, folds, or yeast. We like to keep our meal system super simple, and this muffin recipe can be used as a base recipe with different mix in options. As a bonus, they freeze and thaw very well; perfect for busy families. If you want a muffin recipe with no grains, see this recipe
Check out more beginner fresh milled flour & sourdough recipes here.
How To Make Flaky Fresh Milled Blueberry Muffins
You will be surprised how simple these blueberry muffins are to make! (Scroll down for full recipe card, or check out these quick cliff notes):
Helpful Resources to Make This Recipe
- flour mill
- soft white wheat berries
- stainless steel muffin tins
- unbleached, lower toxin muffin liners
- coconut oil
- honey (preferably raw)
- real vanilla extract
Ingredients
- 1.5 cups finely ground fresh milled flour (I used soft white wheat)
- 3/4 cup blueberries
- 1/2 cup water
- 1/2 cup honey
- 1/4 cup coconut oil
- 2 eggs
- 2 teaspoons baking powder
Instructions
- Grind wheat berries. 1 cup of wheat berries yields about 1 and 1/4 to 1 and 1/2 cups of fresh milled flour.
- Mix wet ingredients together in a mixing bowl, then add baking powder and flour and mix
- Fold in blueberries
- Allow dough to rest for 30 minutes
- Add dough to muffin pans, filling each muffin holder 3/4 full of batter
- Bake at 350 degrees for 15-20 minutes until muffins are golden brown and cooked through the middle (Insert a knife or toothpick. When it comes out clean, the batter is fully cooked).
- Store at room temperature or in the fridge for 2-3 days or freeze for 2-3 months.
Why You Will Love Fresh Milled Flour Blueberry Muffins
- Taste. The flavor comparison of freshly milled flour to store-bought flour is so fresh! The smell and taste are just so much more “flour-y”. We love adding wild blueberries to this recipe, because they are smaller and add more blueberry in each bite.
- Quick & easy to prepare. You can make this recipe with just a few ingredients and no rise time, folding, or yeast needed.
- Healing diet friendly. This recipe has fresh milled flour, which is completely different than using store-bought flour. It is lightyears healthier and less inflammatory than even from scratch sourdough using store-bought flour. Whether you are eating GAPS, Paleo, whole food, or just becoming more ingredient aware, this recipe is can be a compatible next step following many healing diets.
- Versatile. You can use this recipe for a base muffin recipe, switching out your mix-ins, fats, or adding in seasonings like cinnamon for variation.
- Simple ingredients. No need for any specialty or unfamiliar ingredients. Just the basics.
“Gluten” Sensitivity
Why are so many of us sensitive to gluten? Is it actually the gluten? Or is it modern flour, processed and stripped of nutrients? Perhaps a combination of processed flour + the poor immune and digestive system so many of us and/or our children seem to have. It has become so common to have allergies, asthma, or some sort of auto-immune condition that it doesn’t seem abnormal. It is not normal. As our family healed from food allergies using a gut healing protocol, we learned how to re-create favorite recipes with healthier alternatives. With myself and all our children being gluten-sensitive, we were so thrilled to discover we tolerate fresh milled flour well.
We, like many others, tried from scratch sourdough first, using store-bought flour. We continued to have inflammatory reactions from this. Now we make our sourdough and starter using only fresh milled grains and this has made all the difference for us. We have also, remarkably, been able to consume straight fresh mill flour baked goods (not fermented with sourdough first) without reactions since. Disclaimer: I am not a medical doctor, and this is not medical advice. If you have celiac or food allergies, talk with your doctor before adding in any new foods including this recipe.
Check out the process we used to heal from food allergies, auto-immune, and eczema here.
FAQ
- Is it ok to substitute butter or lard in this recipe?
Yes, you can use lard or butter in this recipe in place of the coconut oil. - What kind of muffin liners do you use?
We use these unbleached, lower-toxin muffin liners. Alternately, grease your muffin pan very well if your do not want to use muffin liners. - Do these muffins freeze and thaw well?
Yes! We have had great results with freezing and thawing.

Shop This Post
- flour mill
- soft white wheat berries
- stainless steel muffin tins
- unbleached, lower toxin muffin liners
- coconut oil
- honey (preferably raw)
- real vanilla extract
More Beginner Fresh Milled & Sourdough Recipes
Fresh Milled Flour Sourdough Crackers
Flaky Fresh Milled Flour Biscuits (Dairy-Free Option!)
Fresh Milled Flour Sourdough Pancakes (Dairy-Free Option)
Fresh Milled Flour Sourdough Vanilla Cake (No Refined Sugar)
Fresh Milled Flour Tortillas (Without Sourdough Starter)
We hope your family enjoys these soft, fresh milled flour blueberry muffins as much as ours does! We would love your feedback in the comments below.

Fresh Milled Flour Blueberry Muffins – No Sugar
Equipment
- flour mill
- soft white wheat berries
- stainless steel muffin tins
- unbleached, lower toxin muffin liners
- coconut oil
- honey (preferably raw)
- real vanilla extract
Ingredients
- 1.5 cups fresh milled flour (I used soft white wheat)
- 3/4 cup blueberries (frozen or fresh)
- 1/2 cup water
- 1/2 cup honey
- 1/4 cup coconut oil
- 2 eggs
- 2 tsp baking powder use fresh; less than 6 months old
Instructions
- Grind wheat berries. 1 cup of wheat berries yields about 1 and 1/4 to 1 and 1/2 cups of fresh milled flour.
- Mix wet ingredients together in a mixing bowl, then add baking powder and flour and mix, then fold in blueberries
- Allow dough to rest for 30 minutes, then add dough to muffin pans, filling each muffin holder 3/4 full of batter
- Bake at 350 degrees for 15-20 minutes until muffins are golden brown and cooked through the middle (Insert a knife or toothpick. When it comes out clean, the batter is fully cooked).
Notes
This post contains affiliate links, which means I may make a small commission at no extra cost to you. See my full disclosure here.

Love blueberries and fresh milled flour! I’m trying to work in more FMF recipes, and this looks like a great one to try!
These look yummy, can’t remember the last time I made blueberry muffins so will add this recipe to my rotation.
This muffins are lovely! What a great, simple recipe can’t wait to give it a try 😊
I love that you’re using honey and coconut oil in these, sounds so good! Coconut oil in muffins really is so tasty!
This recipe looks delicious and is timely as I’m cutting sugar out of our diet. We already have to eat gluten-free but are now tackling the sugar. Thank you!!!!